am_stat object.

am_stat object.

am_stat(x, method = c("none","holm","hommel", "hochberg",
               "bonferroni", "BH", "BY", "fdr"),
               ...)

Arguments

x	dataset containing Trouvelot or Grid data
method	adjusts the p-value for multiple comparisons (see p.adjust) The default is no adjustment for multiple comparisons.
...	ignored

Examples

am_stat(example_grid)
#>      group1    group2 Total.pval Hyphopodia.pval IntrHyphae.pval
#> 1        WT cyclops-3     0.1029          0.0184          0.0509
#> 2        WT cyclops-4     0.0397          0.2495          0.0124
#> 3        WT  ccamk-13     0.0097          0.0184          0.0003
#> 4 cyclops-3 cyclops-4     0.5565          0.1261          0.3856
#> 5 cyclops-3  ccamk-13     0.1636          1.0000          0.0063
#> 6 cyclops-4  ccamk-13     0.3843          0.1261          0.0249
#>   Arbuscules.pval Vesicles.pval
#> 1               0             0
#> 2               0             0
#> 3               0             0
#> 4               1             1
#> 5               1             1
#> 6               1             1
am_stat(example_trouvelot)
#>   group1 group2 F.pval M.pval a.pval A.pval
#> 1 Lys 11     TM 0.2488 0.8276 0.4732 0.7152
#> 2 Lys 11   Gifu 0.0065 0.0254 0.8546 0.0800
#> 3     TM   Gifu 0.0308 0.0190 0.3758 0.0474