Overview

Teaching: 20 min
Exercises: 10 min

Questions

• Why contig extention?

• How to extend a contig?

Objectives

• Practical example of contig extention

• How to check the extention

• Describe the pipeline

MITObim sofware

The contig extetion has done by MITObim.

Procedure

1. Run MITObim (only one iteration)
   MITObim.pl ...

2. Blast extended sequence against original sequence and add the extentions to the original sequence

3. Map the new sequence and check if it can be extended more

4. If yes, repeat the extention operations

Key Points

• MITOBim software